Public Member Functions |
| | Cycle (Molecule *molecule) |
| virtual | ~Cycle () |
| void | Simplify () |
| virtual void | Erase (Atom *pAtom1, Atom *pAtom2) |
| virtual void | Insert (Atom *pAtom1, Atom *pAtom2, Chain &chain) |
| bool | IsBetterForBonds (Cycle *pCycle) |
| void | GetAngles2D (Bond *pBond, double *a1, double *a2) |
| int | GetFusedBonds () |
| std::string | Name () |
| | Chain (Bond *pBond, Atom *pAtom=NULL, TypeId Type=ChainType) |
| | Chain (Molecule *molecule, Bond *pBond, TypeId Type=ChainType) |
| | Chain (Molecule *molecule, Atom *pAtom, TypeId Type=ChainType) |
| virtual | ~Chain () |
| void | FindCycles (Atom *pAtom) |
| bool | FindCycle (Atom *pAtom, Bond *pBond) |
| void | Extract (Atom *pAtom1, Atom *pAtom2, Chain &chain) |
| void | Reverse () |
| void | AddBond (Atom *start, Atom *end) |
| unsigned | GetUnsaturations () |
| unsigned | GetHeteroatoms () |
| bool | Contains (Atom *pAtom) |
| bool | Contains (Bond *pBond) |
| unsigned | GetLength () |
| double | GetMeanBondLength () |
| Atom * | GetNextAtom (Atom *pAtom) |
| | Object (TypeId Id=OtherType) |
| virtual | ~Object () |
| TypeId | GetType () const |
| void | SetId (gchar const *Id) |
| gchar const * | GetId () const |
| virtual void | AddChild (Object *object) |
| Object * | GetMolecule () const |
| Object * | GetReaction () const |
| Object * | GetGroup () const |
| Document * | GetDocument () const |
| Object * | GetParentOfType (TypeId Id) const |
| Object * | GetChild (const gchar *Id) const |
| Object * | GetFirstChild (std::map< std::string, Object * >::iterator &i) |
| Object * | GetNextChild (std::map< std::string, Object * >::iterator &i) |
| Object * | GetDescendant (const gchar *Id) const |
| Object * | GetParent () const |
| void | SetParent (Object *Parent) |
| virtual xmlNodePtr | Save (xmlDocPtr xml) const |
| virtual bool | Load (xmlNodePtr node) |
| virtual void | Move (double x, double y, double z=0.) |
| virtual void | Transform2D (Matrix2D &m, double x, double y) |
| bool | SaveChildren (xmlDocPtr xml, xmlNodePtr node) const |
| void | SaveId (xmlNodePtr node) const |
| xmlNodePtr | GetNodeByProp (xmlNodePtr node, char const *Property, char const *Id) |
| xmlNodePtr | GetNextNodeByProp (xmlNodePtr node, char const *Property, char const *Id) |
| xmlNodePtr | GetNodeByName (xmlNodePtr node, char const *Name) |
| xmlNodePtr | GetNextNodeByName (xmlNodePtr node, char const *Name) |
| bool | HasChildren () const |
| unsigned | GetChildrenNumber () const |
| virtual Object * | GetAtomAt (double x, double y, double z=0.) |
| virtual bool | Build (std::list< Object * > &Children) throw (std::invalid_argument) |
| virtual double | GetYAlign () |
| virtual bool | BuildContextualMenu (GtkUIManager *UIManager, Object *object, double x, double y) |
| void | EmitSignal (SignalId Signal) |
| virtual bool | OnSignal (SignalId Signal, Object *Child) |
| void | Lock (bool state=true) |
| bool | IsLocked () |
| Object * | GetFirstLink (std::set< Object * >::iterator &i) |
| Object * | GetNextLink (std::set< Object * >::iterator &i) |
| void | Link (Object *object) |
| void | Unlink (Object *object) |
| virtual void | OnUnlink (Object *object) |
| void | GetPossibleAncestorTypes (std::set< TypeId > &types) const |
| virtual bool | SetProperty (unsigned property, char const *value) |
| virtual std::string | GetProperty (unsigned property) const |
| virtual void | OnLoaded () |
| void | SetDirty (bool dirty=true) |
| virtual void | Clear () |
| std::string | Identity () |
| virtual char const * | HasPropertiesDialog () const |
| void | ShowPropertiesDialog () |
| bool | GetDirty (void) const |
Represents a cycle.
Definition at line 36 of file cycle.h.